Package: biglasso 1.6.0

biglasso: Extending Lasso Model Fitting to Big Data

Extend lasso and elastic-net model fitting for ultra high-dimensional, multi-gigabyte data sets that cannot be loaded into memory. Designed to be more memory- and computation-efficient than existing lasso-fitting packages like 'glmnet' and 'ncvreg', thus allowing the user to analyze big data analysis even on an ordinary laptop.

Authors:Yaohui Zeng [aut], Chuyi Wang [aut], Tabitha Peter [aut], Patrick Breheny [aut, cre]

biglasso_1.6.0.tar.gz
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biglasso.pdf |biglasso.html
biglasso/json (API)
NEWS

# Install 'biglasso' in R:
install.packages('biglasso', repos = c('https://pbreheny.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/pbreheny/biglasso/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • colon - Gene expression data from colon-cancer patients

On CRAN:

bigdatalassoout-of-coreparallel-computing

5 exports 113 stars 4.76 score 9 dependencies 7 mentions 68 scripts 1.7k downloads

Last updated 5 months agofrom:9d68ff63ad. Checks:OK: 7 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 18 2024
R-4.5-win-x86_64NOTESep 18 2024
R-4.5-linux-x86_64NOTESep 18 2024
R-4.4-win-x86_64OKSep 18 2024
R-4.4-mac-x86_64OKSep 18 2024
R-4.4-mac-aarch64OKSep 18 2024
R-4.3-win-x86_64OKSep 18 2024
R-4.3-mac-x86_64OKSep 18 2024
R-4.3-mac-aarch64OKSep 18 2024

Exports:biglassobiglasso_fitbiglasso_pathcv.biglassosetupX

Dependencies:BHbigmemorybigmemory.srilatticeMatrixncvregRcppRcppArmadillouuid

biglasso

Rendered frombiglasso.Rmdusingknitr::rmarkdownon Sep 18 2024.

Last update: 2024-04-21
Started: 2021-01-06